FA-Index Instructions

A tool from the for managing FASTA formatted sequence databases, and indexing them for use with programs in the ProteinProspector package.

	MS-Fit		MS-Seq	MS-Edman
MS-Digest	MS-Product	MS-Comp	DB-Stat	MS-Isotope

Newly Downloaded Database:
seqdb/
DNA to Protein
Delete DNA Database

Relative path from ProteinProspector executable directory to JAVASCRIPT file to update:

After running this script you must Reload Form to see new database choices.
If re-load button doesn't work, place cursor in URL location box of browser and press return.
Selected Database:

Suffix for Subset Database:
Existing Database:
Species:
MW of Protein: (from Da to Da) All

Suffix for Subset Database:
Database used in search to save Hits:

Database Name:

Name:
Species: Accession Number:

Protein Sequence:
Paste or type sequence in this field. Delete these instructions first. Tabs, returns, and spaces are ignored. USE CAPITAL LETTERS. Do NOT use the letters B, J, O, U, X, or Z. Do NOT use 3-letter code amino acid symbols. DNA sequences can be added to DNA databases.

Protein Sequence:
Paste or type sequence in this field. Delete these instructions first. Tabs, returns, and spaces are ignored. USE CAPITAL LETTERS. Do NOT use the letters B, J, O, U, X, or Z. Do NOT use 3-letter code amino acid symbols. DNA sequences can be added to DNA databases.

Database:
Reading Frame: (for DNA only)

Index Number Range: to All

Hide Protein Sequences:

FA-Index byPeteAndKarl (); Instructions

FA-Index Instructions