GROMACS: Parallel Molecular Dynamcis Program

AutoDock is a versatile modeling software developed to carry out molecular dynamics (MD) simulations for a wide-range of systems such as proteins, lipids and polymers. It also comes with a basic trajectory viewer with several attractive features. Go to ABCC GROMACS-application page for more information on the visualization tools that accompany GROMACS. GROMACS has also the capability to run in parallel, and is a free software available under the GNU General Public license. The developers of GROMACS claim that their software is the fastest molecular dynamics (MD) program available.

GROMACS is installed in the ABCC Linux Cluster called tux.

Useful links

  • Go to the Gromacs-Application page for more information on using GROMACS in the ABCC Linux Cluster, tux. (Local Link)
  • Homepage of Gromacs (External Link)
  • If you are new to GROMACS, check their mailing list. It is informative and useful. (External Link)
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